Informações sobre o curso: Introduces to the commands that you need to manage and analyze directories, files, and large sets of genomic data. This is the fourth course in the Genomic Big Data Science Specialization from Johns Hopkins University.
Desenvolvido por: Johns Hopkins University
Ministrado por: Liliana Florea, PhD, Assistant Professor
McKusick-Nathans Institute of Genetic Medicine
| Informações básicas | Curso 5 de 8 no Genomic Data Science Specialization |
| Idioma | English |
| Como ser aprovado | Seja aprovado em todas as tarefas para concluir o curso. |
| Classificação do usuário |
Programa
SEMANA 1
Basic Unix Commands
In this module, you will be introduced to command Line Tools for Genomic Data Science
12 vídeos, 5 leituras
- Reading: Welcome Message
- Reading: Syllabus
- Reading: VMBox Download & Instructions
- Reading: Pre-Course Survey
- Vídeo: Basic Unix Commands 1: Content Representation
- Vídeo: Basic Unix Commands 2: Files, Directories, Paths
- Vídeo: Basic Unix Commands 3: File Naming
- Vídeo: Basic Unix Commands 4: Content Creation
- Vídeo: Basic Unix Commands 5: Accessing Content I
- Vídeo: Basic Unix Commands 6: Accessing Content II
- Vídeo: Basic Unix Commands 7: Redirecting Content
- Vídeo: Basic Unix Commands 8: Querying Content
- Vídeo: Basic Unix Commands 9: Comparing Content
- Vídeo: Basic Unix Commands 10: Archiving Content
- Vídeo: Basic Unix Commands 11: Practical Exercises I
- Vídeo: Basic Unix Commands 12: Practical Exercises II
- Reading: Module 1 Exam Instructions **IMPORTANT**
Nota atribuída: Module 1 Quiz
Nota atribuída: Module 1 Exam
SEMANA 2
Week Two
In this module, we'll be taking a look at Sequences and Genomic Features in a sequence of 10 presentations.
11 vídeos, 1 leitura
- Vídeo: Sequences and Genomic Features 1: Molecular Bio Primer
- Vídeo: Sequences and Genomic Features 2: Sequence Representation and Generation
- Vídeo: Sequences and Genomic Features 3: Annotation
- Vídeo: Sequences and Genomic Features 4.1: Alignment I
- Vídeo: Sequences and Genomic Features 4.2: Alignment II
- Vídeo: Sequences and Genomic Features 5: Recreating Sequences & Features
- Vídeo: Sequences and Genomic Features 6: Genomic Feature Retrieval
- Vídeo: Sequences and Genomic Features 7: SAMtools I
- Vídeo: Sequences and Genomic Features 8: SAMtools II
- Vídeo: Sequences and Genomic Features 9: BEDtools I
- Vídeo: Sequences and Genomic Features 10: BEDtools II
- Reading: Module 2 Exam Instructions **IMPORTANT**
Nota atribuída: Module 2 Quiz
Nota atribuída: Module 2 Exam
SEMANA 3
Week Three
In this module, we'll be going over Alignment and Sequence Variation in another sequence of 8 presentations.
8 vídeos, 1 leitura
- Vídeo: Alignment & Sequence Variation 1: Overview
- Vídeo: Alignment & Sequence Variation 2: Alignment & Variant Detection Tools
- Vídeo: Alignment & Sequence Variation 3: VCF
- Vídeo: Alignment & Sequence Variation 4: Bowtie
- Vídeo: Alignment & Sequence Variation 5: BWA
- Vídeo: Alignment & Sequence Variation 6: SAMtools (mpileup)
- Vídeo: Alignment & Sequence Variation 7: BCFtools
- Vídeo: Alignment & Sequence Variation 8: Variant Calling
- Reading: Module 3 Exam Instructions **IMPORTANT**
Nota atribuída: Module 3 Quiz
Nota atribuída: Module 3 Exam
SEMANA 4
Week Four
In this module, we'll be going over Tools for Transcriptomics in a sequence of 6 presentations.
8 vídeos, 2 leituras
- Vídeo: Tools for Transcriptomics 1: Overview
- Vídeo: Tools for Transcriptomics 2: RNA-seq
- Vídeo: Tools for Transcriptomics 3.1: Tophat I
- Vídeo: Tools for Transcriptomics 3.2: Tophat II
- Vídeo: Tools for Transcriptomics 4: Cufflinks
- Vídeo: Tools for Transcriptomics 5: Cuffdiff
- Vídeo: Tools for Transcriptomics 6.1: Integrated Genomics Viewer I
- Vídeo: Tools for Transcriptomics 6.2: Integrated Genomics Viewer II
- Reading: Module 4 Exam Instructions **IMPORTANT**
- Reading: Post-Course Survey
Nota atribuída: Module 4 Quiz
Nota atribuída: Module 4 Exam
Perguntas frequentes
Como funciona
Coursework
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Desenvolvedores
Johns Hopkins University
The mission of The Johns Hopkins University is to educate its students and cultivate their capacity for life-long learning, to foster independent and original research, and to bring the benefits of discovery to the world.
Custo
| Comprar curso | |
|---|---|
| Acesso aos materiais do curso | Disponível |
| Acesso a materiais valendo nota | Disponível |
| Receba uma nota final | Disponível |
| Obtenha um Certificado de Curso compartilhável | Disponível |
Classificações e avaliações
A really hard introduction to bioinformatics pipelines, it was difficult but was stimulant!
This was one of the most valuable courses I have taken online.
Thank you
Great course. I think it should be the first in the whole series.
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EL
Clear, very practical and applicable