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Voltar para Whole genome sequencing of bacterial genomes - tools and applications

Comentários e feedback de alunos de Whole genome sequencing of bacterial genomes - tools and applications da instituição Universidade Técnica da Dinamarca (DTU)

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1,182 classificações

Sobre o curso

This course will cover the topic of Whole genome sequencing (WGS) of bacterial genomes which is becoming more and more relevant for the medical sector. WGS technology and applications are high on international political agenda, as the classical methods are being replaced by WGS technology and therefore bioinformatic tools are extremely important for allowing the people working in this sector to be able to analyze the data and obtain results that can be interpreted and used for different purposes. The course will give the learners a basis to understand and be acquainted with WGS applications in surveillance of bacteria including species identification, typing and characterization of antimicrobial resistance and virulence traits as well as plasmid characterization. It will also give the opportunity to learners to learn about online tools and what they can be used for through demonstrations on how to use some of these tools and exercises to be solved by learners with use of freely available WGS analysis tools . By the end of this course you should be able to: 1. Describe the general Principles in typing of Bacteria 2. Give examples of the applications of Whole Genome Sequencing to Surveillance of bacterial pathogens and antimicrobial resistance 3. Apply genomic tools for sub-typing and surveillance 4. Define the concept of Next-Generation Sequencing and describe the sequencing data from NGS 5. Describe how to do de novo assembly from raw reads to contigs 6. Enumerate the methods behind the tools for species identification, MLST typing and resistance gene detection 7. Apply the tools for species identification, MLST typing and resistance gene detection in real cases of other bacterial and pathogen genomes. 8. Describe the methods behind the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing 9. Utilize the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing in real cases of other bacterial and pathogen genomes. 10. Explain the concept and be able to use the integrated bacterial analysis pipeline for batch analysis and typing of genomic data 11. Demonstrate how to construct phylogenetic tree based on SNPs 12. Apply the phylogenetic tool to construct phylogenetic trees and explain the relatedness of bacterial or pathogen strains 13. Describe how to create your own sequence database 14. Utilize the MyDbFinder tool to detect genetic markers of interest from whole genome sequencing...

Melhores avaliações

AP

19 de jul de 2020

Thank you very much for this course through which i learnt basic handling of bioinformatics tools and concepts of WGS. This will help me a lot while pursuing my PhD research work in my field.

MB

9 de jun de 2019

Excellent course with a wealth of information about tools and applications of whole genome sequencing. Presented in a very lucid and interesting manner, very crispy and simplified course.

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201 — 225 de 321 Avaliações para o Whole genome sequencing of bacterial genomes - tools and applications

por Mayur M

25 de jun de 2020

Very Clear and informative

por Alexandru B

25 de mar de 2018

very useful. thanks a lot.

por Moayad M A

21 de ago de 2017

very easy and interactive

por Harish.A

18 de jun de 2020

i had finally learned

it

por Elhandi k

8 de mar de 2022

wonderful cours !thanks

por Mark R

5 de jul de 2018

简单明了,适合初学者和做细菌分型溯源的生物学家

por Pradeep K N

30 de jun de 2022

EXCELLENT PROJECT WORK

por Verruchi G 1

15 de ago de 2020

ONE OF THE BEST COURSE

por Hanan K M H

4 de jul de 2020

WONDERFUL >> THANK YOU

por Paola D S

1 de jul de 2020

Useful, well planned!

por Johanna M

24 de abr de 2020

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por Mustafa R C

6 de jan de 2018

Very good, Thanks DTU

por CHUKKA S K

2 de dez de 2020

very understandable

por Reghan M

1 de set de 2021

Its a great course

por Revathy B

26 de mai de 2020

really informative

por Hajar F A

23 de abr de 2020

Really appreciate!

por Dr A V

15 de jul de 2021

good intellectual

por Ackshaya M S

21 de jan de 2022

very nice course

por Md A

3 de jul de 2021

Excellent course

por Shanmukha A P

8 de jun de 2020

Excellent course

por davis e

23 de mai de 2022

amazing course

por Khder h y

23 de nov de 2021

Thank you alot

por Abdul F S

6 de jul de 2021

it was amazing

por Christian A

6 de jun de 2020

Easy to follow

por Bertram K

2 de ago de 2020

Great Course!