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Voltar para Whole genome sequencing of bacterial genomes - tools and applications

Comentários e feedback de alunos de Whole genome sequencing of bacterial genomes - tools and applications da instituição Universidade Técnica da Dinamarca (DTU)

4.6
estrelas
1,185 classificações

Sobre o curso

This course will cover the topic of Whole genome sequencing (WGS) of bacterial genomes which is becoming more and more relevant for the medical sector. WGS technology and applications are high on international political agenda, as the classical methods are being replaced by WGS technology and therefore bioinformatic tools are extremely important for allowing the people working in this sector to be able to analyze the data and obtain results that can be interpreted and used for different purposes. The course will give the learners a basis to understand and be acquainted with WGS applications in surveillance of bacteria including species identification, typing and characterization of antimicrobial resistance and virulence traits as well as plasmid characterization. It will also give the opportunity to learners to learn about online tools and what they can be used for through demonstrations on how to use some of these tools and exercises to be solved by learners with use of freely available WGS analysis tools . By the end of this course you should be able to: 1. Describe the general Principles in typing of Bacteria 2. Give examples of the applications of Whole Genome Sequencing to Surveillance of bacterial pathogens and antimicrobial resistance 3. Apply genomic tools for sub-typing and surveillance 4. Define the concept of Next-Generation Sequencing and describe the sequencing data from NGS 5. Describe how to do de novo assembly from raw reads to contigs 6. Enumerate the methods behind the tools for species identification, MLST typing and resistance gene detection 7. Apply the tools for species identification, MLST typing and resistance gene detection in real cases of other bacterial and pathogen genomes. 8. Describe the methods behind the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing 9. Utilize the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing in real cases of other bacterial and pathogen genomes. 10. Explain the concept and be able to use the integrated bacterial analysis pipeline for batch analysis and typing of genomic data 11. Demonstrate how to construct phylogenetic tree based on SNPs 12. Apply the phylogenetic tool to construct phylogenetic trees and explain the relatedness of bacterial or pathogen strains 13. Describe how to create your own sequence database 14. Utilize the MyDbFinder tool to detect genetic markers of interest from whole genome sequencing...

Melhores avaliações

AP

19 de jul de 2020

Thank you very much for this course through which i learnt basic handling of bioinformatics tools and concepts of WGS. This will help me a lot while pursuing my PhD research work in my field.

MB

9 de jun de 2019

Excellent course with a wealth of information about tools and applications of whole genome sequencing. Presented in a very lucid and interesting manner, very crispy and simplified course.

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176 — 200 de 322 Avaliações para o Whole genome sequencing of bacterial genomes - tools and applications

por Eloy H

28 de out de 2018

It's a great course and it's not so difficult

por Dhanashree J A

20 de nov de 2020

Very well explained and interesting course.

por Zuzana K

25 de fev de 2020

Great course, I found it extremely helpful.

por Shimul D

30 de mai de 2020

That was really awesome.Thanks to everyone

por Ahmed E A e

31 de out de 2018

It isa fantastic course to spend your time

por Kris s

8 de dez de 2017

Genuinly seems fun.

Keep it up Team at TUD

por Valourstar M

15 de nov de 2017

developing skills in sequencing techniques

por Sonia R Q Q

16 de set de 2019

a complete an interesting course, thanks!

por Md. A A

26 de jul de 2020

Its an awesome and very helpful course

por Shakil A S

31 de ago de 2020

Too much tough but still too amazing!

por Sharma

25 de nov de 2019

Great course. Excellent for research.

por Tavonga D Z

3 de jul de 2022

Great hands-on course. I enjoyed it.

por Dordia R

26 de jun de 2020

practical and clear. Really helpful!

por Deepak S

2 de abr de 2020

Excellent course, great instructors.

por huma a

3 de jul de 2022

I have learnt alot from this course

por Eunice O

26 de set de 2020

such an excellent practical course.

por Prince M

29 de out de 2021

AMAZING COURSE THANK YOU VERY MUCH

por Tahir H

23 de dez de 2019

a good experience to get knowledge

por Jenny S

11 de jun de 2020

really helpful and awesome course

por Manaswini K

9 de jun de 2020

very useful ,thank you so much !!

por Rafael P

3 de jun de 2018

Great Course!, congratulations!

por Ibrahim H

9 de nov de 2019

This lecuers exterimly useful.

por Tanvi B

4 de jul de 2022

Very Informative and helpful

por 1806071

8 de set de 2019

Very very informative course

por Katarina E

30 de mar de 2022

Very practical and useful!