Informações sobre o curso
4.6
133 ratings
26 reviews
Neurohacking describes how to use the R programming language (https://cran.r-project.org/) and its associated package to perform manipulation, processing, and analysis of neuroimaging data. We focus on publicly-available structural magnetic resonance imaging (MRI). We discuss concepts such as inhomogeneity correction, image registration, and image visualization. By the end of this course, you will be able to: Read/write images of the brain in the NIfTI (Neuroimaging Informatics Technology Initiative) format Visualize and explore these images Perform inhomogeneity correction, brain extraction, and image registration (within a subject and to a template)....
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cursos 100% online

Comece imediatamente e aprenda em seu próprio cronograma.
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Prazos flexíveis

Redefinir os prazos de acordo com sua programação.
Intermediate Level

Nível intermediário

Clock

Sugerido: 4 weeks of study, 2-4 hours/week

Aprox. 11 horas restantes
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English

Legendas: English

Habilidades que você terá

R ProgrammingImage ProcessingBrainNeurology
Globe

cursos 100% online

Comece imediatamente e aprenda em seu próprio cronograma.
Calendar

Prazos flexíveis

Redefinir os prazos de acordo com sua programação.
Intermediate Level

Nível intermediário

Clock

Sugerido: 4 weeks of study, 2-4 hours/week

Aprox. 11 horas restantes
Comment Dots

English

Legendas: English

Programa - O que você aprenderá com este curso

1

Seção
Clock
1 hora para concluir

Introduction

...
Reading
3 vídeos (Total de 30 min), 1 leitura, 1 teste
Video3 videos
Introduction11min
Structural MRI and R12min
Reading1 leituras
Syllabus10min
Quiz1 exercício prático
Theme 1 Quiz16min

2

Seção
Clock
2 horas para concluir

Neuroimaging: Formats and Visualization

In this section, we will discuss different formats that brain images come in, as well as some of the commonly done magnetic resonance imaging (MRI) scans....
Reading
7 vídeos (Total de 74 min), 6 testes
Video7 videos
The NIfTI Format9min
Basic Visualization 19min
Basic Visualization 29min
Basic Data Manipulation9min
Transformations and Smoothing14min
Basic MRI Contrasts9min
Quiz6 exercícios práticos
Theme 2 Lecture 1 Quiz10min
Theme 2 Lecture 2 Quiz10min
Theme 2 Lecture 3 Quiz10min
Theme 2 Lecture 4 Quiz10min
Theme 2 Lecture 5 Quiz10min
Theme 2 Lecture 6 Quiz10min

3

Seção
Clock
3 horas para concluir

Image Processing

In this section, we will discuss the steps done to process brain MRI data. We will discuss inhomogeneity correction, brain extraction or skull stripping, and various image registration techniques....
Reading
9 vídeos (Total de 71 min), 9 testes
Video9 videos
Registration15min
fslr: System Requirements8min
Bias Field Correction Using fslr3min
Brain Extraction using fslr5min
Image Registration Using fslr5min
Installing ANTsR5min
Basic Data Manipulation with ANTsR4min
Pre-Processing with ANTSR7min
Quiz9 exercícios práticos
Theme 3 Quiz 110min
Theme 3 Quiz 210min
Theme 3 Quiz 312min
Theme 3 Quiz 410min
Theme 3 Quiz 510min
Theme 3 Quiz 610min
Theme 3 Quiz 710min
Theme 3 Quiz 810min
Theme 3 Quiz 910min

4

Seção
Clock
3 horas para concluir

Extended Image Processing

In this section, we will discuss the different types of registration and how one would go through processing a multi-sequence MRI scan, as well as wrapper functions that make the process much easier. We also cover interactive exploration of brain image data and tissue-level (white/gray matter and cerebrospinal fluid (CSF)) segmentation from a T1-weighted image....
Reading
11 vídeos (Total de 101 min), 1 leitura, 10 testes
Video11 videos
Co-Registration using fslr9min
Co-Registration using ANTsR9min
Wrapper Functions for Processing Pipelines8min
Across-Visit Co-Registration of T1 Images6min
Rigid Registration to a Template8min
Affine Registration of T1 to Template4min
Nonlinear Registration of T1 to Template6min
Getting ROI Anatomic Information from Non-Linear Registration12min
Tissue-Level Segmentation7min
Papayar: Interactively Viewing Images in R22min
Reading1 leituras
Papayar Script10min
Quiz10 exercícios práticos
Theme 4 Quiz 110min
Theme 4 Quiz 210min
Theme 4 Quiz 36min
Theme 4 Quiz 410min
Theme 4 Quiz 510min
Theme 4 Quiz 610min
Theme 4 Quiz 710min
Theme 4 Quiz 810min
Theme 4 Quiz 910min
Theme 4 Quiz 1010min
4.6

Melhores avaliações

por BRFeb 9th 2017

I like that this course goes through most necessary steps, my only suggest would be to have one additional week where you go through everything all together, and then do some simple group analysis.

por ANJul 18th 2017

Perfect! Precise to the subject and provides a lot of hands-on details, which is, unfortunately, something that most other similar courses don't do. Absolutely loved it!

Instrutores

Dr. Elizabeth Sweeney

Rice Academy Postdoctoral Fellow
Biostatistics

Ciprian M. Crainiceanu

Professor
Biostatstics

John Muschelli III

Assistant Scientist
Biostatistics

Sobre Johns Hopkins University

The mission of The Johns Hopkins University is to educate its students and cultivate their capacity for life-long learning, to foster independent and original research, and to bring the benefits of discovery to the world....

Perguntas Frequentes – FAQ

  • Once you enroll for a Certificate, you’ll have access to all videos, quizzes, and programming assignments (if applicable). Peer review assignments can only be submitted and reviewed once your session has begun. If you choose to explore the course without purchasing, you may not be able to access certain assignments.

  • When you purchase a Certificate you get access to all course materials, including graded assignments. Upon completing the course, your electronic Certificate will be added to your Accomplishments page - from there, you can print your Certificate or add it to your LinkedIn profile. If you only want to read and view the course content, you can audit the course for free.

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